Tacker, Manfred; Stadler, Peter F.; Bornberg-Bauer, Erich G. - Santa Fe Institute - 1996
Algorithms predicting RNA secondary structures based on different folding criteria---minimum free energy (mfe), kinetic folding (kin), maximum matching (mm)---and different parameter sets are studied systematically. Two base pairing alphabets were used: the binary GC and the natural four-letter...