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  • Search: subject:"phylogenetics"
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Subject
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Phylogenetics 8 Mathematical programming 6 Mathematische Optimierung 6 Theorie 6 Theory 6 phylogenetics 6 Combinatorial optimization 3 Markov chain Monte Carlo 3 Scheduling problem 3 Scheduling-Verfahren 3 Algorithm 2 Algorithmus 2 Entropie 2 Entropy 2 Historical linguistics 2 Levenshtein distance 2 hidden Markov model 2 network design 2 ASJP 1 Balanced minimum evolution 1 Balanced minimum evolution polytope 1 Balanced minimum evolution problem 1 Bayesian inference 1 Bayesian modelling 1 Bioinformatics 1 Classification 1 Clonal deconvolution and evolution problem 1 Cluster analysis 1 Coalescence theory 1 Combinatorial algorithm 1 Completely uniformly distributed sequences 1 Composition potential 1 Cross-entropy 1 DNA sequence alignment 1 DNA-walk 1 Felsenstein zone 1 Fixed-tree balanced minimum evolution problem 1 Ganzzahlige Optimierung 1 Global alignment 1 Information entropy 1
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Online availability
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Undetermined 13 Free 4
Type of publication
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Article 14 Book / Working Paper 3
Type of publication (narrower categories)
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Article in journal 4 Aufsatz in Zeitschrift 4 Arbeitspapier 3 Graue Literatur 3 Non-commercial literature 3 Working Paper 3
Language
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Undetermined 10 English 7
Author
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Catanzaro, Daniele 5 Frohn, Martin 5 Pesenti, Raffaele 5 Gascuel, Olivier 3 Husmeier, Dirk 2 Bakker, Dik 1 Beerli, Peter 1 Brown, Cecil H. 1 Caligiorne, R.B 1 Calvo, Borja 1 Chen, Shu-Chuan 1 Chi, Hongmei 1 Efromovich, Sam 1 Hipp, Andrew 1 Holman, Eric W. 1 Kedzierska, Anna 1 Kishino, Hirohisa 1 Kubatko, Laura Salter 1 Larget, Bret 1 Lawrie, Charles H. 1 Licinio, P 1 Lindsay, Bruce 1 Luo, Ruiyan 1 Mantzaris, Alexander 1 Martins, Leonardo Oliveira 1 Petroni, Filippo 1 Serva, Maurizio 1 Tellaetxe-Abete, Maitena 1 Wichmann, Søren 1
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Published in...
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Statistical Applications in Genetics and Molecular Biology 4 LIDAM discussion paper CORE 3 Physica A: Statistical Mechanics and its Applications 3 European journal of operational research : EJOR 2 Annals of the Institute of Statistical Mathematics 1 Computational Statistics & Data Analysis 1 Computers & operations research : and their applications to problems of world concern ; an international journal 1 Mathematics and Computers in Simulation (MATCOM) 1 Operations research letters 1
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Source
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RePEc 10 ECONIS (ZBW) 7
Showing 1 - 10 of 17
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Addressing the multiplicity of optimal solutions to the Clonal Deconvolution and Evolution Problem
Tellaetxe-Abete, Maitena; Lawrie, Charles H.; Calvo, Borja - In: European journal of operational research : EJOR 320 (2025) 3, pp. 777-788
Persistent link: https://www.econbiz.de/10015085377
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A massively parallel exact solution algorithm for the balanced minimum evolution problem
Catanzaro, Daniele; Frohn, Martin; Gascuel, Olivier; … - 2023
Persistent link: https://www.econbiz.de/10013486248
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On the approximability of the fixed-tree balanced minimum evolution problem
Frohn, Martin - 2021
Persistent link: https://www.econbiz.de/10012821206
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A tutorial on the balanced minimum evolution problem
Catanzaro, Daniele; Frohn, Martin; Gascuel, Olivier; … - 2021
Persistent link: https://www.econbiz.de/10012821222
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A tutorial on the balanced minimum evolution problem
Catanzaro, Daniele; Frohn, Martin; Gascuel, Olivier; … - In: European journal of operational research : EJOR 300 (2022) 1, pp. 1-19
Persistent link: https://www.econbiz.de/10013173827
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An information theory perspective on the balanced minimum evolution problem
Catanzaro, Daniele; Frohn, Martin; Pesenti, Raffaele - In: Operations research letters 48 (2020) 3, pp. 362-367
Persistent link: https://www.econbiz.de/10012254106
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Enumerating vertices of the balanced minimum evolution polytope
Catanzaro, Daniele; Pesenti, Raffaele - In: Computers & operations research : and their … 109 (2019), pp. 209-217
Persistent link: https://www.econbiz.de/10012065045
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Quasi-Monte Carlo method in population genetics parameter estimation
Chi, Hongmei; Beerli, Peter - In: Mathematics and Computers in Simulation (MATCOM) 103 (2014) C, pp. 33-38
The computations of likelihood or posterior distribution of parameters of complex population genetics models are common tasks in computational biology. The numerical results of these approaches are often found by Monte Carlo simulations. Much of the recent work of Monte Carlo approaches to...
Persistent link: https://www.econbiz.de/10010785227
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Improving mixture tree construction using better EM algorithms
Chen, Shu-Chuan; Lindsay, Bruce - In: Computational Statistics & Data Analysis 74 (2014) C, pp. 17-25
This paper is concerned with hierarchical clustering of long binary sequence data. We propose two alternative improvements of the EM algorithm used in Chen and Lindsay (2006). One is the FixEM. It is just the regular EM but we no longer update the weights πs used in the ancestral mixture...
Persistent link: https://www.econbiz.de/10011056427
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Measures of lexical distance between languages
Petroni, Filippo; Serva, Maurizio - In: Physica A: Statistical Mechanics and its Applications 389 (2010) 11, pp. 2280-2283
The idea of measuring distance between languages seems to have its roots in the work of the French explorer Dumont D’Urville (1832) [13]. He collected comparative word lists for various languages during his voyages aboard the Astrolabe from 1826 to 1829 and, in his work concerning the...
Persistent link: https://www.econbiz.de/10011058812
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