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Empirical Bayes and Resampling Based Multiple Testing Procedure Controlling Tail Probability of the Proportion of False Positives.

Laan, Mark van der; Birkner, Merrill; Hubbard, Alan - In: Statistical Applications in Genetics and Molecular Biology 4 (2007) 1, pp. 29-29

previously proposed augmentation multiple testing procedure (van der Laan, Dudoit, & Pollard (2004b)) and competing procedures …

Persistent link: https://www.econbiz.de/10005752566

Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives

Laan, Mark van der; Dudoit, Sandrine; Pollard, Katherine - In: Statistical Applications in Genetics and Molecular Biology 3 (2007) 1, pp. 15-15

(asymptotically) controls the FWER at level alpha, we propose simple augmentation procedures that provide (asymptotic) level … typically rely on the assumption that the test statistics are independent, while our proposed augmentation procedures control …. Applying the augmentation methods to step-down multiple testing procedures that control the FWER asymptotically exactly at …

Persistent link: https://www.econbiz.de/10005246510

Empirical Bayes and Resampling Based Multiple Testing Procedure Controlling Tail Probability of the Proportion of False Positives.

Laan, Mark van der; Birkner, Merrill; Hubbard, Alan - In: Statistical Applications in Genetics and Molecular Biology 4 (2009) 1, pp. 29-29

previously proposed augmentation multiple testing procedure (van der Laan, Dudoit, & Pollard (2004b)) and competing procedures …

Persistent link: https://www.econbiz.de/10005046583

Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives

Laan, Mark van der; Dudoit, Sandrine; Pollard, Katherine - In: Statistical Applications in Genetics and Molecular Biology 3 (2009) 1, pp. 15-15

Persistent link: https://www.econbiz.de/10005046596

On Reference Designs For Microarray Experiments

Steibel, Juan; Rosa, Guilherme - In: Statistical Applications in Genetics and Molecular Biology 4 (2007) 1, pp. 36-36

We compare four variants of the reference design for microarray experiments in terms of their relative efficiency. A common reference sample across arrays is the most extensively used variation in practice, but independent samples from a reference group have also been considered in previous...

Persistent link: https://www.econbiz.de/10005585076

Quality Optimised Analysis of General Paired Microarray Experiments

Kristiansson, Erik; Anders SjÃÂ¶gren; Rudemo, Mats; … - In: Statistical Applications in Genetics and Molecular Biology 5 (2007) 1, pp. 10-10

In microarray experiments, several steps may cause sub-optimal quality and the need for quality control is strong. Often the experiments are complex, with several conditions studied simultaneously. A linear model for paired microarray experiments is proposed as a generalisation of the paired...

Persistent link: https://www.econbiz.de/10005246476

Experimental Design for Two-Color Microarrays Applied in a Pre-Existing Split-Plot Experiment

Milliken, G.; Garrett, K.; Travers, S. - In: Statistical Applications in Genetics and Molecular Biology 6 (2007) 1, pp. 20-20

Microarray applications for the study of gene expression are becoming accessible for researchers in more and more systems. Applications from field or laboratory experiments are often complicated by the need to superimpose sample pairing for two-color arrays on experimental designs that may...

Persistent link: https://www.econbiz.de/10005246492